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16s rRNA

GATK

Genomic Variants from RNA-Seq Data

1 minute read

Published:

RNA-Seq allows the detection and quantification of known and rare RNA transcripts within a sample. In addition to differential expression and detection of novel transcripts, RNA-seq also supports the detection of genomic variation in expressed regions. Read more

Indel

Genomic Variants from RNA-Seq Data

1 minute read

Published:

RNA-Seq allows the detection and quantification of known and rare RNA transcripts within a sample. In addition to differential expression and detection of novel transcripts, RNA-seq also supports the detection of genomic variation in expressed regions. Read more

MatrixEqtl

eQTL analysis of RNA-Seq data

less than 1 minute read

Published:

Genetic locus that affects gene expression is often referred to as expression quantitative trait locus (eQTL). eQTL mapping studies assesses the association of SNPs with genome-wide expression levels. Read more

RNA-Seq

Genomic Variants from RNA-Seq Data

1 minute read

Published:

RNA-Seq allows the detection and quantification of known and rare RNA transcripts within a sample. In addition to differential expression and detection of novel transcripts, RNA-seq also supports the detection of genomic variation in expressed regions. Read more

eQTL analysis of RNA-Seq data

less than 1 minute read

Published:

Genetic locus that affects gene expression is often referred to as expression quantitative trait locus (eQTL). eQTL mapping studies assesses the association of SNPs with genome-wide expression levels. Read more

SNP

Genomic Variants from RNA-Seq Data

1 minute read

Published:

RNA-Seq allows the detection and quantification of known and rare RNA transcripts within a sample. In addition to differential expression and detection of novel transcripts, RNA-seq also supports the detection of genomic variation in expressed regions. Read more

STAR

Genomic Variants from RNA-Seq Data

1 minute read

Published:

RNA-Seq allows the detection and quantification of known and rare RNA transcripts within a sample. In addition to differential expression and detection of novel transcripts, RNA-seq also supports the detection of genomic variation in expressed regions. Read more

cnv

computing

curation

discordant sex informaion

Quality control for GWAS studies

1 minute read

Published:

An important step in the analysis of genome-wide association studies (GWAS) is to identify problematic subjects and markers. Quality control (QC) in GWAS removes markers and individuals, and greatly increases the accuracy of findings. Read more

eQTL

eQTL analysis of RNA-Seq data

less than 1 minute read

Published:

Genetic locus that affects gene expression is often referred to as expression quantitative trait locus (eQTL). eQTL mapping studies assesses the association of SNPs with genome-wide expression levels. Read more

edgeR

eQTL analysis of RNA-Seq data

less than 1 minute read

Published:

Genetic locus that affects gene expression is often referred to as expression quantitative trait locus (eQTL). eQTL mapping studies assesses the association of SNPs with genome-wide expression levels. Read more

genomics

heterozygosity rate

Quality control for GWAS studies

1 minute read

Published:

An important step in the analysis of genome-wide association studies (GWAS) is to identify problematic subjects and markers. Quality control (QC) in GWAS removes markers and individuals, and greatly increases the accuracy of findings. Read more

htseq

eQTL analysis of RNA-Seq data

less than 1 minute read

Published:

Genetic locus that affects gene expression is often referred to as expression quantitative trait locus (eQTL). eQTL mapping studies assesses the association of SNPs with genome-wide expression levels. Read more

human complement

microbiome

missingness

Quality control for GWAS studies

1 minute read

Published:

An important step in the analysis of genome-wide association studies (GWAS) is to identify problematic subjects and markers. Quality control (QC) in GWAS removes markers and individuals, and greatly increases the accuracy of findings. Read more

networks

Quality control for GWAS studies

1 minute read

Published:

An important step in the analysis of genome-wide association studies (GWAS) is to identify problematic subjects and markers. Quality control (QC) in GWAS removes markers and individuals, and greatly increases the accuracy of findings. Read more

qiime2

runs of homozygosity

Quality control for GWAS studies

1 minute read

Published:

An important step in the analysis of genome-wide association studies (GWAS) is to identify problematic subjects and markers. Quality control (QC) in GWAS removes markers and individuals, and greatly increases the accuracy of findings. Read more